Luminescence/ 0000755 0001762 0000144 00000000000 14171341001 012654 5 ustar ligges users Luminescence/NAMESPACE 0000644 0001762 0000144 00000017721 14171333561 014117 0 ustar ligges users # Generated by roxygen2: do not edit by hand
S3method("$",RLum.Analysis)
S3method("$",RLum.Data.Curve)
S3method("$",RLum.Results)
S3method("$<-",DRAC.list)
S3method("*",RLum.Data.Curve)
S3method("+",RLum.Data.Curve)
S3method("-",RLum.Data.Curve)
S3method("/",RLum.Data.Curve)
S3method("[",RLum.Analysis)
S3method("[",RLum.Data.Curve)
S3method("[",RLum.Data.Image)
S3method("[",RLum.Data.Spectrum)
S3method("[",RLum.Results)
S3method("[<-",DRAC.list)
S3method("[<-",RLum.Data.Curve)
S3method("[[",RLum.Analysis)
S3method("[[",RLum.Results)
S3method("[[<-",DRAC.list)
S3method(as.data.frame,DRAC.list)
S3method(as.data.frame,RLum.Data.Curve)
S3method(as.data.frame,RLum.Data.Spectrum)
S3method(as.data.frame,Risoe.BINfileData)
S3method(as.list,RLum.Analysis)
S3method(as.list,RLum.Data.Curve)
S3method(as.list,RLum.Data.Image)
S3method(as.list,RLum.Results)
S3method(as.matrix,RLum.Data.Curve)
S3method(as.matrix,RLum.Data.Image)
S3method(as.matrix,RLum.Data.Spectrum)
S3method(dim,RLum.Data.Curve)
S3method(dim,RLum.Data.Spectrum)
S3method(hist,RLum.Analysis)
S3method(hist,RLum.Data.Curve)
S3method(hist,RLum.Data.Image)
S3method(hist,RLum.Results)
S3method(length,RLum.Analysis)
S3method(length,RLum.Data.Curve)
S3method(length,RLum.Results)
S3method(length,Risoe.BINfileData)
S3method(merge,RLum)
S3method(names,RLum.Analysis)
S3method(names,RLum.Data.Curve)
S3method(names,RLum.Data.Image)
S3method(names,RLum.Data.Spectrum)
S3method(names,RLum.Results)
S3method(names,Risoe.BINfileData)
S3method(plot,RLum.Analysis)
S3method(plot,RLum.Data.Curve)
S3method(plot,RLum.Data.Image)
S3method(plot,RLum.Data.Spectrum)
S3method(plot,RLum.Results)
S3method(plot,Risoe.BINfileData)
S3method(plot,list)
S3method(print,DRAC.highlights)
S3method(print,DRAC.list)
S3method(rep,RLum)
S3method(row.names,RLum.Data.Spectrum)
S3method(subset,RLum.Analysis)
S3method(subset,Risoe.BINfileData)
S3method(summary,RLum.Analysis)
S3method(summary,RLum.Data.Curve)
S3method(summary,RLum.Data.Image)
S3method(summary,RLum.Results)
S3method(unlist,RLum.Analysis)
export(Analyse_SAR.OSLdata)
export(CW2pHMi)
export(CW2pLM)
export(CW2pLMi)
export(CW2pPMi)
export(PSL2Risoe.BINfileData)
export(Risoe.BINfileData2RLum.Analysis)
export(Second2Gray)
export(analyse_Al2O3C_CrossTalk)
export(analyse_Al2O3C_ITC)
export(analyse_Al2O3C_Measurement)
export(analyse_FadingMeasurement)
export(analyse_IRSAR.RF)
export(analyse_SAR.CWOSL)
export(analyse_SAR.TL)
export(analyse_baSAR)
export(analyse_pIRIRSequence)
export(analyse_portableOSL)
export(apply_CosmicRayRemoval)
export(apply_EfficiencyCorrection)
export(bin.RLum.Data.Curve)
export(bin.RLum.Data.Spectrum)
export(bin_RLum.Data)
export(calc_AliquotSize)
export(calc_AverageDose)
export(calc_CentralDose)
export(calc_CobbleDoseRate)
export(calc_CommonDose)
export(calc_CosmicDoseRate)
export(calc_FadingCorr)
export(calc_FastRatio)
export(calc_FiniteMixture)
export(calc_FuchsLang2001)
export(calc_HomogeneityTest)
export(calc_Huntley2006)
export(calc_IEU)
export(calc_Kars2008)
export(calc_Lamothe2003)
export(calc_MaxDose)
export(calc_MinDose)
export(calc_OSLLxTxDecomposed)
export(calc_OSLLxTxRatio)
export(calc_SourceDoseRate)
export(calc_Statistics)
export(calc_TLLxTxRatio)
export(calc_ThermalLifetime)
export(calc_WodaFuchs2008)
export(calc_gSGC)
export(calc_gSGC_feldspar)
export(combine_De_Dr)
export(convert_Activity2Concentration)
export(convert_BIN2CSV)
export(convert_Concentration2DoseRate)
export(convert_Daybreak2CSV)
export(convert_PSL2CSV)
export(convert_RLum2Risoe.BINfileData)
export(convert_SG2MG)
export(convert_Wavelength2Energy)
export(convert_XSYG2CSV)
export(extract_IrradiationTimes)
export(fit_CWCurve)
export(fit_EmissionSpectra)
export(fit_LMCurve)
export(fit_OSLLifeTimes)
export(fit_SurfaceExposure)
export(fit_ThermalQuenching)
export(get_Layout)
export(get_Quote)
export(get_RLum)
export(get_Risoe.BINfileData)
export(get_rightAnswer)
export(github_branches)
export(github_commits)
export(github_issues)
export(install_DevelopmentVersion)
export(is.RLum)
export(is.RLum.Analysis)
export(is.RLum.Data)
export(is.RLum.Data.Curve)
export(is.RLum.Data.Image)
export(is.RLum.Data.Spectrum)
export(is.RLum.Results)
export(length_RLum)
export(merge_RLum)
export(merge_RLum.Analysis)
export(merge_RLum.Data.Curve)
export(merge_RLum.Results)
export(merge_Risoe.BINfileData)
export(names_RLum)
export(plot_AbanicoPlot)
export(plot_DRCSummary)
export(plot_DRTResults)
export(plot_DetPlot)
export(plot_FilterCombinations)
export(plot_GrowthCurve)
export(plot_Histogram)
export(plot_KDE)
export(plot_NRt)
export(plot_OSLAgeSummary)
export(plot_RLum)
export(plot_RLum.Analysis)
export(plot_RLum.Data.Curve)
export(plot_RLum.Data.Image)
export(plot_RLum.Data.Spectrum)
export(plot_RLum.Results)
export(plot_ROI)
export(plot_RadialPlot)
export(plot_Risoe.BINfileData)
export(plot_ViolinPlot)
export(read_BIN2R)
export(read_Daybreak2R)
export(read_PSL2R)
export(read_RF2R)
export(read_SPE2R)
export(read_TIFF2R)
export(read_XSYG2R)
export(replicate_RLum)
export(report_RLum)
export(sTeve)
export(scale_GammaDose)
export(set_RLum)
export(set_Risoe.BINfileData)
export(smooth_RLum)
export(structure_RLum)
export(template_DRAC)
export(tune_Data)
export(use_DRAC)
export(verify_SingleGrainData)
export(write_R2BIN)
export(write_RLum2CSV)
exportClasses(RLum)
exportClasses(RLum.Analysis)
exportClasses(RLum.Data)
exportClasses(RLum.Data.Curve)
exportClasses(RLum.Data.Image)
exportClasses(RLum.Data.Spectrum)
exportClasses(RLum.Results)
exportClasses(Risoe.BINfileData)
exportMethods(bin_RLum.Data)
exportMethods(get_RLum)
exportMethods(get_Risoe.BINfileData)
exportMethods(length_RLum)
exportMethods(names_RLum)
exportMethods(replicate_RLum)
exportMethods(set_RLum)
exportMethods(set_Risoe.BINfileData)
exportMethods(show)
exportMethods(smooth_RLum)
exportMethods(structure_RLum)
import(data.table)
import(methods)
import(utils)
importFrom(Rcpp,evalCpp)
importFrom(grDevices,adjustcolor)
importFrom(grDevices,axisTicks)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.off)
importFrom(grDevices,gray.colors)
importFrom(grDevices,rgb)
importFrom(grDevices,topo.colors)
importFrom(grDevices,xy.coords)
importFrom(graphics,abline)
importFrom(graphics,arrows)
importFrom(graphics,axTicks)
importFrom(graphics,axis)
importFrom(graphics,barplot)
importFrom(graphics,box)
importFrom(graphics,boxplot)
importFrom(graphics,close.screen)
importFrom(graphics,contour)
importFrom(graphics,curve)
importFrom(graphics,frame)
importFrom(graphics,grconvertX)
importFrom(graphics,grconvertY)
importFrom(graphics,grid)
importFrom(graphics,hist)
importFrom(graphics,layout)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,mtext)
importFrom(graphics,par)
importFrom(graphics,persp)
importFrom(graphics,plot)
importFrom(graphics,plot.default)
importFrom(graphics,points)
importFrom(graphics,polygon)
importFrom(graphics,rug)
importFrom(graphics,screen)
importFrom(graphics,segments)
importFrom(graphics,split.screen)
importFrom(graphics,text)
importFrom(graphics,title)
importFrom(httr,GET)
importFrom(httr,accept_json)
importFrom(httr,content)
importFrom(httr,status_code)
importFrom(parallel,makeCluster)
importFrom(parallel,parLapply)
importFrom(parallel,stopCluster)
importFrom(stats,approx)
importFrom(stats,as.formula)
importFrom(stats,coef)
importFrom(stats,complete.cases)
importFrom(stats,confint)
importFrom(stats,density)
importFrom(stats,dnorm)
importFrom(stats,fitted)
importFrom(stats,formula)
importFrom(stats,glm)
importFrom(stats,lm)
importFrom(stats,median)
importFrom(stats,na.exclude)
importFrom(stats,na.omit)
importFrom(stats,nls)
importFrom(stats,nls.control)
importFrom(stats,pchisq)
importFrom(stats,pnorm)
importFrom(stats,predict)
importFrom(stats,qf)
importFrom(stats,quantile)
importFrom(stats,residuals)
importFrom(stats,rnorm)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(stats,smooth)
importFrom(stats,smooth.spline)
importFrom(stats,spline)
importFrom(stats,t.test)
importFrom(stats,uniroot)
importFrom(stats,update)
importFrom(stats,var)
importFrom(stats,weighted.mean)
useDynLib(Luminescence, .registration = TRUE)
Luminescence/README.md 0000644 0001762 0000144 00000010366 14171333563 014157 0 ustar ligges users
# Luminescence
The R package `'Luminescence'` by the R-Luminescence Group provides a
collection of various R functions for luminescence dating data analysis.
[](https://www.repostatus.org/#active)
[](https://zenodo.org/badge/latestdoi/23153315)
[](https://cran.r-project.org/package=Luminescence)
[](https://cran.r-project.org/web/checks/check_results_Luminescence.html)
[](https://www.r-pkg.org/pkg/Luminescence)
[](https://www.r-pkg.org/pkg/Luminescence)
[](https://www.r-pkg.org/pkg/Luminescence)
[](https://www.r-pkg.org/pkg/Luminescence)
[](https://github.com/R-Lum/Luminescence/actions)
[](https://codecov.io/github/R-Lum/Luminescence?branch=master)
## Social media and other resources
Follow us on
[](https://twitter.com/RLuminescence)
or visit our [R-Luminescence homepage](https://r-luminescence.org).
## Installation
#### i. Requirements
- *Windows (32/64bit)*:
[Rtools](https://cran.r-project.org/bin/windows/Rtools/) (provided
by CRAN)
- *macOS*: [Xcode](https://developer.apple.com/) (provided by Apple)
- *Linux*: [gcc](https://gcc.gnu.org) often comes pre-installed in
most distributions.
#### ii. Install the package
Install any development versions using our
[RStudio](https://www.rstudio.com) add-in

##### The plain **R** way
To install the stable version from CRAN, simply run the following from
an R console:
``` r
install.packages("Luminescence")
```
To install the latest development builds directly from GitHub, run
``` r
if(!require("devtools"))
install.packages("devtools")
devtools::install_github("R-Lum/Luminescence@")
```
## Contribute
The R luminescence project is based on and evolves from ideas,
contributions and constructive criticism of its users. Help us to
maintain and develop the package, to find bugs and create new functions
as well as a user-friendly design. Try
or write us an
[e-mail](mailto:developers@r-luminescence.org) if anything crosses your
mind or if you want your new self-written function to be to implemented.
You are kindly invited to bring forward the package with us!
## Note
**The package comes without any guarantee!**
Please further note that this version is a development version and may
change day by day. For stable branches please visit the package on [CRAN
Luminescence](https://CRAN.R-project.org/package=Luminescence).
## License
This program is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by the
Free Software Foundation, either version 3 of the License, or any later
version.
This program is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the [GNU
General Public
License](https://github.com/R-Lum/Luminescence/blob/master/LICENSE) for
more details.
## Related projects
- [RLumModel](https://github.com/R-Lum/RLumModel)
- [RLumShiny](https://github.com/R-Lum/RLumShiny)
- [RLumDocker](https://github.com/R-Lum/RLumDocker)
- [BayLum](https://github.com/crp2a/BayLum)
- [RCarb](https://github.com/R-Lum/RCarb)
- [RLumCarlo](https://github.com/R-Lum/RLumCarlo)
## R package dependencies

Luminescence/data/ 0000755 0001762 0000144 00000000000 14171333122 013572 5 ustar ligges users Luminescence/data/ExampleData.portableOSL.rda 0000644 0001762 0000144 00000065754 13240265321 020656 0 ustar ligges users 7zXZ i"6 ! X